Full-Text Search:
Home|Journal Papers|About CNKI|User Service|FAQ|Contact Us|中文
《Marine Sciences》 2005-09
Add to Favorite Get Latest Update

The molecular phylogeny of infraoder caridea based on 16S rDNA sequences

XU Yan, SONG Lin-sheng, LI Xin-zheng ( Institute of Oceanology, the Chinese Academy of Sciences, Qingdao 266071, China; Graduate School of the Chinese Academy of Sciences, Beijing 100039, China)  
The molecular phylogeny of infraorder caridea was revealed by partial 16S rDNA sequences amplified from 8 species (belonging to 7 families) in our study, and other 12 species sequences were cited from Genbank. Alignment of the sequences showed a considerable variation in 221 nucleotide sites and 180 parsimony informative sites. The variation rate of transversion was higher than transition. A dendrogram of the 20 ca-ridean shrimps was reconstructed based on the 16S rDNA sequences with Austropotamobius pallipes as out-group. The results were as fellow: (1) Anchistus custos of Pontoniinae, Palaemonidae located far away from the branch of Palaemonidae. Its 16S rDNA sequences, blasted in Genbank, was firstly aligned with insects in Hexapoda. (2) The four species in the two close genera Palaemon and Palaemonetes were clustered in one composite branch, but the species in the two different genera were not separated correspondingly. (3) Exhip-polysmata ensirostris of Hippolytidae, Alpheoidea were not the sister group of Alpheidae in the dendrogram, but located with Crangon affinis of crangonidae, crangonoidea. The study revealed that the fragment of 16S rDNA was very suitable to analyze the relationship among genera in the caridea. But for family or higher level taxa and for species or lower taxa, the sequence was not very applicable. The sequence variation was over-conservative for species or lower taxa, and it was too fast for family or higher level taxa.
【Fund】: 国家自然科学基金项目(30370186)
【CateGory Index】: Q951.3
Download(CAJ format) Download(PDF format)
CAJViewer7.0 supports all the CNKI file formats; AdobeReader only supports the PDF format.
【References】
Chinese Journal Full-text Database 3 Hits
1 DOU Hong-xia1,2,ZHANG Tong-qing2,XU Zhi-qiang2,CHEN Chan-juan1,ZHANG Xin3,GE Jia-chun2,HUANG Yahong1(1.School of Life Science,Nanjing University,Nanjing 210093;2.Freshwater Fishery ResearchInstitute of Jiangsu Province,Nanjing 210017;3.School of Animal Science and Technology,Nanjing Agricultural University,Nanjing 210095);Molecular Phylogeny of 9 Species of Palaemoninae rafinesque Based on 16S rDNA Fragment Sequences[J];Freshwater Fisheries;2008-01
2 MA Peng1, 2, LIU Ping1, LI Jian1, LI Ji-Tao1, GAO Bao-Quan1 (1. Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071; 2. Ocean University of Dalian, Dalian, 116023);THE GENETIC DIVERSITY OF THE 16S rRNA GENE IN THE MITOCHONDRIAL DNA OF THREE WILD POPULATIONS OF EXOPALAEMON CARINICAUDA[J];Oceanologia et Limnologia Sinica;2012-01
3 CHI Da-li1,2,GAO Huan1,SHEN Song-dong2,YAN Bin-lun1(1.Jiangsu Key Laboratory of Marine Biotechnology,Huaihai Institute of Technology,Lianyungang 222005,China;2.Life Sciences College,Suzhou University,Suzhou 215123,China);Comparison analysis between purple and tea-green individuals of Portunus trituberculatus using mitochondrial partial genes[J];Marine Sciences;2010-11
【Citations】
Chinese Journal Full-text Database 3 Hits
1 YIN Wen ying 2 (Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences, the Chinese Academy of Sciences,Shanghai 200025,China);Introduction to a New Hypothesis "Pancrustacea":A Review of the Progress of Arthropod Phylogeny[J];Zoological Research;2003-01
2 GUO Tian-hui 1, KONG Xiao-yu 1, CHEN Si-qing 2, YU Zi-niu1(1. Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China; 2. Yellow Sea Institute of Fishery Science, Chinese Academy of Fishery Science, Qingdao 266071, China);A Study of the Sequences of Mitochondrial 16S rRNA and COI Gene Fragments of Portunus trituberculatus[J];Journal of Ocean University of Qingdao;2004-01
3 Wu Chen, Song Daxiang, Zhu Mingsheng (College of Life Sciences, Hebei University, Baoding 071002, China);ON THE PHYLOGENY OF SOME IMPORTANT GROUPS OF SPIDERS BY USING THE THIRD DOMAIN OF 12S rRNA GENE SEQUENCE ANALYSES[J];Acta Arachnologica Sinica;2002-02
【Co-citations】
Chinese Journal Full-text Database 10 Hits
1 BI Ke-ran et al (Jiangsu Key Laboratory of Marine Biotechnology,College of Oceaneering,Huaihai Institute of Technology,Lianyungang,Jiangsu 222005);Discussion on Phylogenetic Relation of Some Important Spider Groups Based on Mitochondrial 16S rRNA Genes[J];Journal of Anhui Agricultural Sciences;2010-05
2 ZHANG Long-gang et al(Fresh Water Fisheries Research Institute of Shandong Province,Shandong Provincial Key Laboratory of Fresh Water Aqucluture Genetic Breeding,Jinan,shandong 250117);Cloning and Sequence Analysis of 16S rRNA and COI Gene in Mitochondrial DNA of Scortum barcoo[J];Journal of Anhui Agricultural Sciences;2010-35
3 BI Ke-Ran, ZHOU Kai-Ya 1** , SONG Da-Xiang Jiangsu Key Laboratory for Bioresource Technology, College of Life Sciences, Nanjing Normal University, Nanjing 210097, China;Phylogenetic position of the spider subfamily Coelotinae (Araneae) inferred from nuclear rDNA gene sequences[J];Acta Zoologica Sinica;2005-03
4 PAN Hong-Chun 1 , WU Bao-Shan1, SONG Da-Xiang2, HAO Jia-Sheng1, ZHU Guo-Ping11.Laboratory of Molecular Evolution and Biodiversity,College of Life Sciences, Anhui Normal University, Wuhu 241000, Anhui Province2.College of Life Sciences, Hebei University, Baoding 071002, Hebei Province;rRNA and MaSp1 gene do not support the monophyly of Orbiculariae(Araneae: Deinopoidea + Araneoidea)[J];Acta Zoologica Sinica;2007-03
5 SUN Yue-Na① FENG Jian-Bin① LI Jia-Le ①* NIE Shi-Zhong② (① The Key Laboratory of Aquatic Genetic Resources and Aquacultural Ecology Certificated bythe Ministry of Agriculture, Shanghai Fisheries University, Shanghai 200090;② Changxing Fisheries Technology Station, Changxing Zhejiang 313100, China);Sequence Analysis and Molecular Phylogeny of Mitochondrial 16S rRNA Gene Fragments in Three Populations of Macrobrachium nipponense[J];Chinese Journal of Zoology;2007-01
6 FENG Bing-Bing① LI Jia-Le ① NIU Dong-Hong① CHEN Lin② ZHENG Yue-Fu② ZHENG Kai-Hong②(① The Key Laboratory of Aquatic Genetic Resources and Aquacultural Ecology Certificated by the Ministry of Agriculture,Shanghai Fisheries University,Shanghai 200090;② Xiangshan Fisheries Technology Station,Xiangshan 315700,China);Compared Analysis on the Sequences of Mitochondrial CR Gene and COⅠ Gene Fragments of Nine Wild Stocks of Portunus trituberculatus from the Marginal Seas of China[J];Chinese Journal of Zoology;2008-02
7 XU Tian-Jun SUN Yue-Na LIAO Zhi WANG Ri-Xin (School of Marine Science,Zhejiang Ocean University,Laboratory for Marine Living Resources and Molecular Engineering,Zhoushan 316000,China );Genetic Structure and Sequence Analysis of Four Stocks of Marsupenaeus japonicus Using Mitochondrial 16S rRNA[J];Chinese Journal of Zoology;2010-02
8 BI Xiang-dong1,YANG Lei2,HOU Jun-li1,BAI Dong-qing1,DONG Shao-jie1,SUN Jin-hui1,LI Yong-ren1,HOU Lin3(1.Tianjin Key Laboratory of Aqua-ecology and Aquaculture,Department of Fishery Sciences,Tianjin Agricultural University,Tianjin 300384,China;2.Biological Teaching and Research Group of Fifty-fourth Mid-School in Tianjin,Tianjin 300171,China;3.College of Life Sciences,Liaoning Normal University,Dalian 116029,China);Application of COⅠ Gene in Molecular Systematics of Marine Animals[J];Fisheries Science;2008-02
9 LI Hui,LI Tai-wu,SU Xiu-rong,QIN Yu-ming,WANG Meng-qian,HE Jing-jing,HU Guang-zhou,HUANG Shang-feng,ZHOU Jun(Key Laboratory of Applied Technology of Marine Biology,Ministry of Education,Faculty of Life Science and Biotechnology,Ningbo University,Ningbo 315211,China);The Phylogenetic Relation of Sea Cucumber Acaudina molpadioidea[J];Fisheries Science;2009-12
10 LI Xia,QIN Yan-jie,CHU Guan-nan,ZHOU Bo-wen(Key Laboratory of Mariculture,Agriculture Ministry,PRC,Dalian Fisheries Univ.,Dalian 116023,China);Genetic relationship between sea scallop and three scallops in China based on partial 16S rRNA gene sequences[J];Journal of Dalian Fisheries University;2009-03
【Co-references】
Chinese Journal Full-text Database 10 Hits
1 WANG Jian et al(Jiangsu Animal Husbandry and Veterinary College,Taizhou,Jiangsu 225300);Review of Research on Meat Quality in Goose[J];Journal of Anhui Agricultural Sciences;2008-05
2 MIAO Jin lai 1, 2 , SHI Hong qi 1, 2 , LI Guang you 2, WANG Bo 2 & HAN Li 2 (1 Marine Life College, Ocean University of Qingdao, Qingdao 266003, China) (2 Key Laboratory of Marine Bio active Substances, State Ocean Admission, Qingdao 26;SOME RESEARCH ON THE WAYS OF RED TIDE PREDICTION AND PREVENTION[J];Journal of Safety and Environment;2002-03
3 LI TAI-WU (Liaoning Normal University, Dalian 116022);ON SPERMATOGENESIS AND SPERM ULTRASTRUCTURE OF BLUE CRAB PORTUNUS TRITUBERCULATUS (CRUSTACEA, DECAPODA)[J];Acta Zoologica Sinica;1995-01
4 XUE Jun-Zeng (Department of Biology, Hangzhou Normal College, Hangzhou\ 310036, China) DU Nan-Shan LAI Wei (Department of Biology, East China Normal University, Shanghai\ 200062,China);MORPHOLOGY OF EGG-LARVAE OF SWIMMING CRAB(PORTUNUS TRITUBERCULATUS) DURING EMBRYONIC DEVELOPMENT[J];Acta Zoologica Sinica;2001-04
5 QIU Gao Feng XU Qiao Ting WANG Li Qing FAN Zheng CHEN Xue Jing (Key Laboratory of Ecology and Physiology in Aquaculture, Ministry of Agriculture, Fisheries College, Shanghai Fisheries University, Shanghai 200090, China);MOLECULAR TAXONOMY AND PHYLOGENY OF FOUR SPECIES OF ERIOCHEIR (DECAPODA: BRACHYURA: GRAPSIDAE)[J];Acta Zoologica Sinica;2001-06
6 SUN Hong Ying ZHOU Kai Ya  YANG Xiao Jun (Institute of Genetic Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210097, China );Phylogenetic relationships of the mitten crabs inferred from mitochondrial 16S rDNA partial sequences (Crustacean, Decapoda)[J];Acta Zoologica Sinica;2003-05
7 LI Yue 1,2 ,WU Min 1** ,WANG Xiu Ling 3 1 College of Life Science, Zhejiang University, Hangzhou 310029,China 2 The Key Laboratory of Conservation Genetics and Reproductive Biology for Endangered Wild Animals, Ministry of Education, Hangzhou 310029,China 3 Department of Biology,Xinjiang Normal University,Urumqi 830054,China;Phylogenetic relationships of Hynobiidae based on sequences of mitochondrial 16S ribosomal RNA gene[J];Acta Zoologica Sinica;2004-03
8 SUN Hong-Ying,WANG Guang-Yue,ZHANG Dai-Zhen,ZHOU Kai-Ya~(**)Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University,Nanjing 210097,China;Mitochondrial DNA sequence variation in two geographical subspecies of the mitten crab Eriocheir japonica[J];Acta Zoologica Sinica;2005-05
9 ZHU Dong-Fa **,WANG Chun-Lin,XUE Liang-Yi,YU Hong-WeiFaculty of Life Science and Biotechnology, Ningbo University, Ningbo 315211, Zhejiang, China;Observation on the sperm-egg interaction of Portunus trituberculatus by scanning electron microscopy[J];Acta Zoologica Sinica;2006-01
10 DING Shao-Xiong 1,2,WANG Ying-Hui1,WANG Jun1, ZHUANG Xuan1, SU Yong-Quan 1**, YOU Ying-Zhe3,LI Qi-Fu2 1.Department of Oceanography and Institute of Subtropical Oceanography, Xiamen University, Xiamen 361005, China2.Department of Biology, Xiamen University, Xiamen 361005, China3.Zhangzhou Aquaculture Technique Popularizing Department, Zhangzhou 363000, Fujian, China;Molecular phylogenetic relationships of 30 grouper species in China Seas based on 16S rDNA fragment sequences[J];Acta Zoologica Sinica;2006-03
【Secondary References】
Chinese Journal Full-text Database 9 Hits
1 CAI Xiao-hui,PENG Yin-hui,SONG Zhong-kui,YAN Bing,YANG Jia-lin (Guangxi Key Laboratory of Marine Biotechnology,Guangxi Institute of Oceanology, Beihai,Guangxi,536000,China);Genetic Diversity of Geographic Populations of Scylla Paramamosain Based on ISSR Markers[J];Guangxi Sciences;2011-04
2 MA Peng1, 2, LIU Ping1, LI Jian1, LI Ji-Tao1, GAO Bao-Quan1 (1. Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071; 2. Ocean University of Dalian, Dalian, 116023);THE GENETIC DIVERSITY OF THE 16S rRNA GENE IN THE MITOCHONDRIAL DNA OF THREE WILD POPULATIONS OF EXOPALAEMON CARINICAUDA[J];Oceanologia et Limnologia Sinica;2012-01
3 MA Peng1,2 LIU Ping2 LI Jian2 LI Ji-tao2 CHEN Ping2 (1Ocean University of Dalian,116023) (2Key Laboratory for Sustainable Utilization of Marine Fisheries Resources,Ministry of Agriculture,Yellow Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Qingdao 266071);The genetic diversity and phylogenetic analysis of COI gene in mitochondrial DNA of three populations of Exopalaemon carinicauda[J];Progress in Fishery Sciences;2011-06
4 GAO Shu-jing1,LI Dong-wei2,LIU Ai-ping1,YAN Zhi-jian1,WANG Ning1,WEI Yun-shan3(1.Grassland Research Institute of Chinese Academy of Agricultural Sciences,Huhhot 010010,China; 2.Inner Mongolia Agriculture University,Insititite of Agriculture,Huhhot 010019,China;3.Chifeng Academy of Agricultural and Animal Husbandry Sciences,Chifeng 024031,China);Genetic Variation Analysis of Seven Geographic Populations of Oedaleus asiaticus B.Bienko from Inner Mongolia based on Mitochondrial 16S rRNA Gene Sequences[J];Acta Agriculturae Boreali-Sinica;2012-04
5 DUAN Ya-Fei 1, 2 , LIU Ping 1 , LI Ji-Tao 1 , LI Jian 1 , CHEN Ping 1 , GAO Bao-Quan 1 , XU Wen-Fei 1, 3 , WANG You-Kun 1, 2 (1. Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071; 2. Ocean University of Shanghai, Shanghai, 201306; 3. Ocean University of Dalian, Dalian, 116023);CLONING AND EXPRESSION OF CATHEPSIN D GENE IN EXOPALAEMON CARINICAUDA[J];Oceanologia et Limnologia Sinica;2013-03
6 GAN Zhi-bin;LI Xin-zheng;Institute of Oceanology, Chinese Academy of Sciences;University of Chinese Academy of Sciences;;A preliminary phylogenetic analysis of the family Palaemonidae(Caridea: Palaemonoidea) based on mitochondrial 16s rRNA gene[J];Marine Sciences;2014-07
7 CAI Xiao-hui,SONG Zhong-kui,PENG Yin-hui,NIE Zhen-ping,ZHAO Peng,SU Qiong (Guangxi Key Laboratory for Marine Biotechnology,Guangxi Institute of Oceanology,Beihai 536000,China);ISSR analysis of two Scylla paramamosain populations with different body colors[J];Journal of Oceanography in Taiwan Strait;2011-03
8 MA Peng1,2,LIU Ping1,LI Jian1(1.Yellow Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Qingdao 266071,China;2.College of Fisheries and Life Sciences,Ocean University of Dalian,Dalian 116023,China);The genetic diversity and phylogenetic analysis of ITS1 in mitochondrial DNA of three populations of Exopalaemon carinicauda[J];Journal of Fisheries of China;2012-08
9 LIU Ping;DUAN Yafei;MAO Zhichao;LI Jitao;GAO Baoquan;LI Jian;Key Laboratory of Sustainable Development of Marine Fisheries,Ministry of Agriculture,Yellow Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences;;Sequence comparison and phylogenetic analysis of mtDNA 16S rRNA and COⅠ gene sequences in Orithyia sinica[J];Journal of Fisheries of China;2013-10
【Secondary Citations】
Chinese Journal Full-text Database 10 Hits
1 XUE Jun Zeng (Department of Biology, Hangzhou Normal College\ Hangzhou 310036) DU Nan Shan\ LAI Wei (Department of Biology, East China Normal University\ Shanghai\ 200062);STUDIES ON THE EMBRYONIC DEVELOPMENT OF PORTUNUS TRITUBERCULATUS[J];CHINESE JOURNAL OF ZOOLOGY;1998-06
2 YIN Wen-Ying(Shanghai Institute of Entomology, the Chinese Academy of Scieaces, Shanghai 200025)LIANG Ai-Ping(Institute of Zoology, the Chinese Acadmy of Sciences, Beijing 100080);ON SOME BASIC PROBLEMS IN ARTHROPOD SYSTEMATICS[J];ACTA ZOOTAXONOMICA SINICA;1998-04
3 SHAO Hong Guang( Shanghai Institute of Entomology,Chinese Academy of Sciences,Shanghai 200025);SOME MOLECULAR EVIDENCES FOR SYSTEMATIC AND EVOLUTIONARY PROBLEMS IN ARTHROPODA[J];ACTA ZOOTAXONOMICA SINICA;2000-01
4 XIE Qiang BU Wen-Jun(Department of Biology, Life Sciences College, Nankai University, Tianjin 300071; wenjunbu@nankai.edu.cn) LI Xin-Zheng(Institute of Oceanology, Chinese Academy of Sciences, Qingdao, Shandong 266071) ZHENG Le-Yi(Department o;THE PROGRESS IN THE STUDY OF PHYLOGENY OF ARTHROPODA[J];Acta Zootaxonomica Sinica;2002-03
5 ZHOU Kai Ya ① (Institute of Genetic Resources,Nanjing Normal University,Nanjing 210097,China);Molecular Phylogenetics of Amphibians and Reptiles[J];Zoological Research;2001-05
6 YIN Hong, LIU Xiao li, WANG Yan fang,ZHANG Dao chuan,ZHAO Xiao yu (College of Life Science, Hebei University, Baoding 071002,China);An Improved Method for Extracting Genomic DNA of Insect[J];Journal of Hebei University(Natural Science Edition);2002-01
7 Song Daxiang (Institute of ZoologyAcademia Sinica,Beijing);SYSTEMATICS AND EVOLUTION OF ORDER ARANEAE[J];Journal of Hubei University(Natural Science Edition);1993-02
8 GAO Tianxiang (Fishery College, Ocean University of Qingdao, Qingdao, 266003) WANG Xihong (Marine Fisheries Development Center of Liaoning Province, Dalian, 116015);SEQUENCE STUDY ON 12S rRNA REGION OF STOCKED POPULATION OF JAPANESE MITTEN CRAB, ERIOCHEIR JAPONICA DE HAAN[J];TRANSACTION OF OCEANOLOGY AND LIMNOLOGY;2000-01
9 LIU Ya Jun, YU Zi Niu, JIANG Yan Yan, ZHANG Liu Suo, KONG Xiao Yu, SONG Lin Sheng  (Key Laboratory of Mariculture, Ministry of Education, Ocean University of Qingdao, Qingdao, 266003)  (Institute of Oceanology, The Chinese Acad;SEQUENCE POLYMORPHISM OF MITOCHONDRIAL 16S rRNA GENE FRAGMENT IN SCALLOP CHLAMYS FARRERI[J];Oceanologia Et Limnologia Sinica;2002-05
10 Gao Tianxiang(高天翔) Zhang Xiumei(张秀梅)( Fishery College,Ocean University of Qingdao,Qingdao,266003 )Yoshizaki Goro(吉崎悟朗) Watanabe Seiichi(渡边精一)( Tokyo University of Fisheries,Tokyo,108 8477 Japan );Study on Mitochondrial DNA Sequences of Japanese Mitten Crab, Eriocheir Japonica I. 12S rRNA[J];Journal of Ocean University of Qingdao;2000-01
©2006 Tsinghua Tongfang Knowledge Network Technology Co., Ltd.(Beijing)(TTKN) All rights reserved