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《Marine Sciences》 2015-01
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Sequence characteristics and system evolution of PPC domain from marine bacterial extracellular protease

HUANG Jia-feng;LIU Dan;YANG Xing-hao;WU Ri-bang;WU Cui-ling;HE Hai-lun;School of Life Science, Central South University;  
PPC(Pre-Peptidase C-terminal) domain is widely distributed in the C-terminal region of protease secreted from marine bacterial, and it plays an important role in secretion and localization of protease, as well as adsorption of reaction substrate. The PPC domain sequence analysis showed that there are two conserved sequences in PPC domain amino acid sequence and β-sheet was characterized as spatial structure of the regions. Although some PPC domain sequences show lower consistency, there are conserved sequences and similar three-dimensional structure of PPC domain. In order to analyze the evolutionary relationship of the PPC domain between different strains, this paper did phylogenetic analysis on the amino acid sequences of 61 PPC domains from 39 different stains searched from the NCBI database. The study found that PPC domain sequences were variability and nonconservative in the biological evolution process. According to the results, some PPC domain may be derived from its gene duplication, while some may happen due to horizontal gene transfer event.
【Fund】: 国家自然科学基金项目(31370104 31070061);; 湖南省自然基金联合基金项目(13JJ9001);; 国家星火计划项目(2013GA770009);; 中南大学大学生创新创业训练计划项目(国家级)(201310533050)
【CateGory Index】: Q936
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