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《Jiangsu Journal of Agricultural Sciences》 2012-02
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Construction of molecular genetic linkage map based on a rice RIL population and detection of QTL for tiller angle

DONG Shao-ling1,2,ZHANG Ying-hui1,2,ZHANG Ya-dong1,2,CHEN Tao2,ZHAO Qing-yong2,ZHU Zhen2,ZHOU Li-hui2,YAO Shu2,ZHAO Ling2,WANG Cai-lin2(1.College of Agriculture,Nanjing Agricultural University,Nanjing 210095,China;2.Institute of Food Crops,Jiangsu Academy of Agricultural Sciences,Jiangsu High Quality Rice R&D Center,Nanjing Branch of China National Center for Rice Improvement,Nanjing 210014,China)  
In this study,240 RILs(recombination inbred lines) were developed by single-seed-descent method(SSD) from a cross between Kasalath(Indica) with small grains and TD70(Japanica) with large grains as parents,which had significant differences in plant type traits,and were used to construct a molecular linkage map.Totally 302 polymorphic SSR(simple sequence repeat) markers were detected,accounting for 36.04% of the total markers.141 SSR markers with clear band type and distributing uniformly in the genome were finally used to genotype analysis in a population of 240 lines.Frequencies of male and female genotype in this RIL population respectively were 53% and 47%,indicating the good balance in population structure.A genetic linkage map constructed by 141 markers based on the RIL population spanned 1 832.47 cM length covering all 12 chromosomes with an average density of 12.7 cM,ranging from 0.43 cM and 36.11 cM,which met the basic requirements of quantitative trait locus(QTL) mapping.Except for few markers on chromosomes 1 and 8,markers had the similar order and position as published sequences of Nipponbare.QTL analysis for the tiller angle was conducted with in the 240 lines.The result indicated that in the RIL population,three QTL controlling tiller angle were detected on chromosomes 8,9 and 11,named qTA8,qTA9 and qTA11.The phenotypic variations explained by each QTL were 4.10%,26.08% and 4.35% respectively.qTA9 contained tiller angle controlling gene(TAC1).The map could be used for the genetic analysis and QTL mapping of various traits in the progeny of Indica and Japonica.
【Fund】: 江苏省农业科技自主创新基金项目[CX(11)4023]
【CateGory Index】: S511
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