Full-Text Search:
Home|Journal Papers|About CNKI|User Service|FAQ|Contact Us|中文
《Journal of Agricultural Biotechnology》 2014-12
Add to Favorite Get Latest Update

Genetic Diversity Analysis of Modern Japonica Rice (Oryza satiua L.) from Taihu Area Based on Simple Sequence Repeat (SSR) Markers

LUO Bing;XU Gang-Ming;SUN Hai-Yan;YANG Zhi-Gang;SHEN Zong-Gen;GAO Yang;WANG Xiao-Hu;DUANMU Yin-Xi;College of Biology and Food Engineering,Changshu Institute of Technology;Changshu Branch Center,China National Hybrid Rice Reserch and Development Center;Changshou Academy of Agricultural Science;  
The japonica rice(Oryza satiua ssp. japonica) resources are rich in Taihu area. Along with largescale popularization of rice varieties, the genetic basis of breeding material is became narrower and the genetic similarity is increased, thus the japonica rice breeding has became more difficult. Genetic diversity of42 japonica rice varieties, collected from Taihu area, was analyzed by 24 pairs of simple sequence repeat(SSR) primers. The SSR primers were located at 12 rice chromosomes, and 2 pairs of SSR primers were selected at each chromosome. The results showed that 23 pairs of SSR primers performed polymorphism in the 42 materials. A total of 105 alleles loci were detected among 42 varieties using the 23 pairs of SSR primers. The average number of detected alleles by each primer pair was 4.57 with a range from 2 to 8. The effective alleles were 56.43 with average 2.45. The value of allelic polymorphism information content(PIC)varied widely from 0.083 0 to 0.807 9 with an average value of 0.496 6. The number of polymorphic loci each variety ranged from 6 to 19, and the number of allele loci ranged from 27 to 55. The genetic similarity coefficient of SSR markers among 42 japonica rice varieties ranged from 0.391 to 0.990, with average 0.610,and the genetic similarity coefficient of 74.45% tested materials ranged from 0.50 to 0.80. Furthermore, the UPGMA(unweight pair group method with arithmetic mean) clustering analysis at the genetic similarity value of 0.50 grouped the 42 japonica rice varieties into two groups. The 19 conventional japonica rice varieties could be grouped, and they were divided into 2 subgroups at the level of genetic similarity coefficient 0.58.Another group was composed of the 23 japonica hybrid rice varieties, and it also was divided into two subgroups at the level of genetic similarity coefficient 0.70. Based on the all analysis, it was concluded that the genetic background comparability of the japonica rice varieties in Taihu area was high and the diversity was low. Therefore, introducing and making use of the new genetic resources and creating breeding materials should be strengthened. The genetic diversity of japonica rice based on SSR markers can provide technical support and theoretical basis for breeding new rice varieties in Taihu area.
【Fund】: 江苏农业科技科技支撑项目(No.BE2011445);; 苏州市科技计划项目(No.SZS201102 No.SYN201110和No.SNG201323);; 江苏省大学生实践创新训练计划项目(No.201310333032Y);; 苏州市吴江区科技计划项目(No.WN201311和No.WN201317);; 常熟市科技计划项目(No.CS201205)
【CateGory Index】: S511.22
Download(CAJ format) Download(PDF format)
CAJViewer7.0 supports all the CNKI file formats; AdobeReader only supports the PDF format.
Chinese Journal Full-text Database 10 Hits
1 YANG Jing1.2,LIU Haiying2,QIAN Chunrong3,JIN Zhenxun2(1.Harbin Academy of Agricultural Sciences,Harbin 150070,China; 2.College of Agriculture,Northeast Agricultural University,Harbin 150030,China; 3.Crop Tillage and Cultivation Institute,Heilongjiang Academy of Agricultural Sciences,Harbin 150086,China);Analysis on genetic diversity of rice varieties in Heilongjiang Province by using SSR[J];Journal of Northeast Agricultural University;2008-06
2 QIU Lin1,LI Jungang2,CHEN Ying1,TU Shengbin1(1.Chengdu Institute of Biology,Chinese Academy of Sciences,Chengdu 610041,China;2.Agricultural Service Center of Shiju Village in Renshou County,Meishan Sichuan 620575,China);SSR analysis of genetic diversity of rice germplasms resistant to blast[J];Journal of Northeast Agricultural University;2011-10
3 MA Jing,SUN Jian-chang,WANG Xing-sheng,YANG Sheng-long(Institute of Crop Science,Ningxia Academy of Agriculture and Forestry Sciences,Yongning,Ningxia 750105,China);Genetic Diversity and Genetic Relationship of Inbred Japonica Rice Varieties in Ningxia[J];Acta Botanica Boreali-Occidentalia Sinica;2011-05
4 LIU Xi-lan1,CHEN Chuan-hua2,LIU Guang-lin2,CHEN Yuan-meng2(1 Agricultural College,Guangxi University,Nanning 530005,China;2 Rice Research Institute,Guangxi Academy of Agricultural Sciences,Nanning 530007,China);Genetic diversity analysis of high quality conventional rice varieties grown in Guangxi and Guangdong using SSR markers[J];Guangxi Agricultural Sciences;2010-04
5 XU Da-yong1,2,ZHONG Huan1,ZHOU Feng2,LU Bai-guan1,FAN Ji-wei1,FANG Zhao-wei1,QIN De-rong1,WAN Jian-min2 (1.Lianyungang Academy of Agricultural Sciences,Lianyungang 222006,China;2.College of Agriculture,Nanjing Agricultural University,Nanjing 210014,China);Genetic Diversity of Mid-ripen Japonica Varieties Ⅱ.Comparison of Genetic Diversity of Japonica Varieties Bred Recently in Huang-huai Region by SSR Markers[J];Jiangsu Journal of Agricultural Sciences;2010-01
6 HUANG Ming 1,2 ,XIE Fang-min 2 ,CHEN Li-yun 1 ,ZHAO Xiang-qian 3 ,L.JOJEE 2 ,D.MADONNA 2 ( 1 Rice Research Institute,Hunan Agricultural University,Changsha 410128,China; 2 Plant Breeding,Genetics and Biotechnology Division,International Rice Research Institute,Metro Manila,DAPO Box 7777,Philippines; 3 Grain Quality,Nutrition and Postharvest Center,International Rice Research Institute,Metro Manila,DAPO Box 7777,Philippines);Comparative Analysis of Genetic Diversity and Structure in Rice Using ILP and SSR Markers[J];水稻科学(英文版);2010-04
7 CONG Xi-han1,2,LI Li2,TENG Bin2,LIU Hai-zhen2,NI Da-hu2,LU Xu-zhong2,SONG Feng-shun2,YANG Jian-bo2(1.School of Life Science,Anhui Universty,Hefei 230039;2.Institute of Rice Research,Anhui Academy of Agricultural Sciences,Hefei 230031,China);Establishment of SSR fingerprint map and analysis of genetic similarity among 56 backbone parental lines in hybrid rice[J];Journal of Biology;2010-01
8 YANG Zhi-rong et al.(State Key Laboratory of Rice Biology,China National Rice Research Institute,Hangzhou Zhejiang 310006,China);Genetic Diversity Analysis of Japonica Rice Varieties Based on SSR Markers[J];Journal of Shanxi Agricultural University(Natural Science Edition);2008-04
9 DUAN Shi-Hua1,2,LI Shao-Qing2,LI Shao-Bo3,and ZHU Ying-Guo2,1 College of Life Sciences,Jinggangshan University,Ji'an 343009,China;2 Key Laboratory of Ministry of Education for Plant Developmental Biology,Wuhan University,Wuhan 430072,China;3 College of Life Sciences,Nanchang University,Nanchang 330031,China;Genetic Diversity of Wild Rice and Cultivated Rice[J];Acta Agronomica Sinica;2009-03
10 XU Shao bin,TAO Yu fen,YANG Zhao qing,CHU Jia you (Department of Genetics,Institute of Medical Biology,Chinese Academy of Medical Sciences& Peking Union Medical College,Kunming 650118,China);A Simple and Rapid Methods Used for Silver Staining and Gel Preservation[J];Hereditas(Beijing);2002-03
Chinese Journal Full-text Database 10 Hits
1 LI Jian-hua,LU Bang-yu,YANG Ming-sheng College of Life Science and Technology,Xiaogan University,Xiaogan 432003;Polymorphism of Intron 14 of Porcine CACNA2D1 Gene and Effects on Muscular pH_(45)[J];畜牧与饲料科学(英文版);2009-02
2 Huo Yuyan et al. (School of Life Sciences,Yangtze University,Jingzhou 434025,China);Research Overview on Application of SSR Markers in Rice[J];Anhui Agricultural Science Bulletin;2010-23
3 Zhao Yao et al.(Lu zhou City Agriculture Bureau,Luzhou 646000,China);The Application of SSR Markers in Seeds Quality Detection[J];Anhui Agricultural Science Bulletin;2011-07
4 Ren Jingwen et al.(Fengyang County Institute of Agricultural Science,Fengyang 233100,China);SSR Marker Technology and Its Application to Maize[J];Anhui Agricultural Science Bulletin;2011-11
5 JU Yu-dong et al (Sugarcane Research Institute,Fujian Academy of Agricultural Science, Zhangzhou, Fujian 363005);Development and Application of Micro-satellite Markers in Rice[J];Journal of Anhui Agricultural Sciences;2005-10
6 ZHU Mei-xia et al(Agriculture Department,Hebei University of Engineering,Handan,Hebei 056038);Purity Identification of Cotton Varieties with SSR Technique[J];Journal of Anhui Agricultural Sciences;2005-11
7 LIU Guan-ming et al (Agriculture and Garden College,Zhongkai Agrotechnical University,Guangzhou,Guangdong 510225);SSR Analysis of Genetic Diversity of Shanyou and Yueyou Peanut Cultivars[J];Journal of Anhui Agricultural Sciences;2006-11
8 CAI Guang-ze et al (Science and Technology Division of Xichang University,Xichang,Sichuan 615013);ISSR Analysis of Genetic Diversity of Specific Japonica Rice Varieties[J];Journal of Anhui Agricultural Sciences;2006-23
9 YU Xin-yan et al (Agricultural College,Shenyang Agricultural University,Shenyang,Liaoning 110161);SSR Marker and its Application to Maize[J];Journal of Anhui Agricultural Sciences;2007-07
10 YAN Yong-gang et al (Leshan Institute of Agriculture and Animal Husbandry Sciences in Sichuan,Emei,Sichuan 614200);Maize Idioplasm Resources research Progress[J];Journal of Anhui Agricultural Sciences;2007-35
China Proceedings of conference Full-text Database 10 Hits
1 Li Xinhai Yuan Lixing Li Mingshun (Institute of Crop Breeding and Cultivation, Chinese Academy of Agricultural Sciences, Key Laboratory of Crop Genetics and Breeding, Ministry of Agriculture, Beijing 100081);Methods and Techniques of Variety Purity Test in Maize[A];[C];2001
2 Wei Xin;Pan Guangtang (Maize Research institute, Sichuan Agriculture University, Yaan, Sichuan, 625014);The genetic diversity variation revealed by SSR markers in the tropical maize population Pob32 after 5 cycles of mass selection[A];[C];2004
3 LIU Xue;LI Ming-Shun;LI Xin-Hai;TIAN Qing-Zhen;BAI Li;ZHANG Shi-Huang (The Institute of Crop Breeding and Cultivation CAAS/Key Lab. of Crop Genetic & Breeding, Ministry of Agriculture, Beijing 100081, China);DNA Sampling in Genetic Variation Survey in Maize Populations Detected by SSR Markers[A];[C];2004
4 Li Ming-Shun;Liu Xue;Chen Wei-Guo;Wu Yong-Sheng;Zhang Shi-Huang Institute of Crop Breeding and Cultivation, AMBIONET-China Lab, CAAS, Beijing 100081, China.;Genetic Relationship among Maize Populations Assessed Based on Yield SCA and SSR Markers[A];[C];2004
5 LI Yu-ling~1;WANG Yan-zhao~1;LU De-bin~1;CHEN Shao-jiang~2;TANG Ji-hua~1 (1. Agronomy College of Henan Agricultural University, Zhengzhou 450002, China; 2. National Maize Improvement Center of China, China Agricultural University, Beijing 100094, China);The Genetic Relationship of Popcorn with Normal Corn Inbreds and Heterosis Predication[A];[C];2004
6 Fan Xing-ming;Chen Hong-mei;Tan Jing;Yang Jun-yun Institute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming 650205;Heterotic Grouping for Tropical and Temperate Maize Inbreds by Analyzing Combining Ability and SSR Markers[A];[C];2004
7 ZHANG Ren-he, XUE Ji-quan, MAO Jian-chang, Ma Guo-sheng, YANG Yin-fu (College of Agronomy Northwest Science and Technology University of Agriculture and Forestry, Yangling, Shaanxi, 712100, China);Study on Genetic Markers and Germplasm Resoures in Maize[A];[C];2004
8 PENG Zhong-hua~1,ZHAO Zhi~1;QIU Hong-bo~1;ZHANG Ming-sheng~(1,2),GAO Xiang~3;GU jin-chun~1 (1.Agricuhural College,Guizhou University,Guizhou Guiyang 550025,China;2.College of Life Science,Nanjing University,Jiangsua Nanjing 210093,China;3.Academy of Agricultural Science,Guizhou Guiyang 550025,China);Genetic diversity of karst high elevation mountain area local of maizeinbred lines by SSR markers[A];[C];2005
9 FANG Liang-jun YE Qun-shan FU Xiao-qin WANG Zheng-chao (Guongdong Ocean University,Guongdong Zhanjiang 524088,China);Studies on rice induced resistance breeding[A];[C];2005
10 LI Xiao-xiang~(1,2) LI Yong-chao~ DUAN Yong-hong~1 ZHANG Qing-cai~1 SUN Gui-hua~1 WANG Shu-hong~1 LIU Yong~2 (1.Hunan Rice Research Institute,Changsha 410125,China;2 School of Biological Science and Technology,Central South University,Changsha 410083,China);SSR Diversity of Introduction Rice Germplasm and Conventional Rice Varieties Bred in Hunan[A];[C];2006
【Secondary Citations】
Chinese Journal Full-text Database 10 Hits
1 CAI Guang-ze et al (Science and Technology Division of Xichang University,Xichang,Sichuan 615013);ISSR Analysis of Genetic Diversity of Specific Japonica Rice Varieties[J];Journal of Anhui Agricultural Sciences;2006-23
2 SHEN Peng,LUO Qiu-xiang,JIN Zheng-xun (Agronomy College,Northeast Agricultural University,Harbin,Heilongjiang, 150030,PRC);Relationship between protein content and the cooking and eating quality properties of rice grain[J];Journal of Northeast Agricultural University;2003-04
3 YANG Jing1.2,LIU Haiying2,QIAN Chunrong3,JIN Zhenxun2(1.Harbin Academy of Agricultural Sciences,Harbin 150070,China; 2.College of Agriculture,Northeast Agricultural University,Harbin 150030,China; 3.Crop Tillage and Cultivation Institute,Heilongjiang Academy of Agricultural Sciences,Harbin 150086,China);Analysis on genetic diversity of rice varieties in Heilongjiang Province by using SSR[J];Journal of Northeast Agricultural University;2008-06
4 WANG Yanhong1,WANG Hui1,Gao Lizhi2(1 College of Agriculture,Academy of Agriculture Science,Northwest SciTech University of Agriculture and Forestry,Yangling,Shaanxi 712100,China;2 Department of Genetics,University of Georgia,Life Building,Athens,GA 30605,U.S.A);Study on genetic diversity of Oryza rufipogon Griff.by simple seqence repeat[J];Acta Botanica Boreali-occidentalia Sinica;2003-10
5 GAN Xiao-yan,LI Miao,GUAN Ya-jing,CHEN Xiao-jun,SONG Yu-xia(Key Lab of Agricultural Biotechnology of Ningxia,Yinchuan 750002,China);Genetic Diversity of 89 Japonica Rice Varieties in Ningxia Province by Using SSR[J];Acta Botanica Boreali-Occidentalia Sinica;2009-09
6 Zhu Lihuang; He Ping(Institute of Genetics, Chinese Academy of Science);Genetic Molecular Linkage Map Construction and Mapping the Important Quality and Quantitative Trait Loci in Rice(Oryza Sativa L.)[J];JOURNAL OF FUDAN UNIVERSITY;1998-04
7 Zheng Jingsheng 1,2 Chen Liangbing 1 Fu Wenying 3 Li Yizhen 1* 1 Hainan Provincial Institute of Tropical Agricultural Resource, Sanya, 572025 2 Institute of Rice and Wheat of Fujian Academy of Agricultural Sciences, Fuzhou, 350019 3 College of Life Science and Agronomy, Hainan University, Haikou, 570228;Genetic Diversity of Different Wild Rice Genomes Revealed by SSR Markers[J];Molecular Plant Breeding;2004-01
8 Wang Aishun1 Li Jinbo2 Liu Hanzhen1 1 Hubei Provincial Seed Management Station, Wuhan, 430070; 2 Hybrid Rice Researc h and Development Center, Hubei Academy of Agricultural Sciences, Wuhan, 430064;Research Advance on Application of DNA Fingerprinting to Identification Seed Purity and Authenticity in Hybrid Rice[J];Molecular Plant Breeding;2005-03
9 WU Fang1,YIN Shouhua1,2,ZHANG Yuanhui1,GUO Huijun1, GONG Zhilian1, LU Baorong2 (1 Xishuangbanna Tropical Botanical Garden,Chinese Academy of Science,Menglun 666303,China; 2 Institute of Biodiversity Science,Fudan University, Shanghai 200023,China);Diversity of morpho-agronomic characteristics in upland-rice varieties in tropical Yunnan[J];Journal of Guangxi Agricultural and Biological Science;2003-04
10 Guo Xiaoping Zhao Yuanming (Economic Crops Institute, Henan Academy of Agricultural Sciences, Zhengzhou 450002) Liu Yuxia (Science and Technology Information Institute, Henan Academy of Agricultural Sciences,Zhengzhou);SSR Technique and Its Application in Plant Genetics and Breeding[J];ACTA AGRICULTURAE BOREALL—SINICA;1998-03
©2006 Tsinghua Tongfang Knowledge Network Technology Co., Ltd.(Beijing)(TTKN) All rights reserved