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《水稻科学(英文版)》 2010-02
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Cluster Analysis on Japonica Rice(Oryza sativa L.) with Good Eating Quality Based on SSR Markers and Phenotypic Traits

ZHANG Chun-hong 1,LI Jin-zhou 1,2,ZHU Zhen 1,ZHANG Ya-dong 1,ZHAO Ling 1,WANG Cai-lin 1(1Institute of Food Crops/Jiangsu High Quality Rice R&D Center/Nanjing Branch of Chinese National Center for Rice Improvement,Jiangsu Academy of Agricultural Sciences,Nanjing 210014,China;2 College of Agriculture,Nanjing Agricultural University,Nanjing 210095,China)  
Diversity of 60 conventional japonica rice accessions with good eating quality at home and abroad was analyzed using SSR molecular markers,agronomic traits and taste characteristics.A total of 290 alleles were detected in the 60 accessions at 72 SSR loci with the high similarity coefficients varying between 0.600 and 0.924.The loci on chromosome 5 showed the greatest value in average allele number.Additionally,most of the SSR loci could detect 3 to 4 alleles.An UPGMA dendrogram based on the cluster analysis of the genetic similarity coefficients showed that the grouping trend of part of the rice accessions was geographic-related and most of the rice accessions in Jiangsu Province,China were clustered together.Furthermore,many domestic accessions from south and north origins in China were close to the foreign japonica rice varieties,as proved by their pedigree origin from the foreign high-quality sources.For taste characteristics,part of the accessions with excellent taste were clearly clustered into one category though they came from different geographical regions,which indicates that taste characteristics of some varieties were mainly genetically determined.In addition,the agronomic traits of japonica rice with good taste might be closely related with their geographical origins,but the relationship between superior taste characteristics and agronomic traits should be further clarified.
【Fund】: supported by the National Science and Technology Support Program(Grant No.2006BAD01A01-5);; the Key Program of the Development of Variety of Genetically Modified Organisms(Grant No.2008ZX08001-006);; Special Program for Rice Scientific Research Ministry of Agriculture China(Grant No.nyhyzx 07-001-006);; the Key Support Program of Jiangsu Science and Technology(Grant No.BE2008354);; Jiangsu Self-innovation Fund for Agricultural Science and Technology China(GrantNo.CX[08]603)
【CateGory Index】: S511
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【References】
Chinese Journal Full-text Database 1 Hits
1 WANG Xiao-ling1,ZHOU Zhi-bao1,2,YU Chuan-yuan1,LEI Jian-guo1,WANG Zhi-quan1,XIAO Yu-long1,LI Ma-zhong1 (1.Rice Research Institute,Jiangxi Academy of Agricultual Sciences,Nanchang 330200,China;2.College of Agronomy Jiangxi Agricultural University,Nanchang 330045,China);A Study on Eating Quality Difference between Indica and Japonica Rice[J];Acta Agriculturae Universitatis Jiangxiensis;2011-04
【Citations】
Chinese Journal Full-text Database 10 Hits
1 WANG Sheng-jun,LU Zuo-mei (State Key Laboratory of Crop Genetics & Germplasm Enhancement,Nanjing Agricultural University,Nanjing 210095,China);Evolvement and Analysis of Genetic Diversity in Indica Hybrid Rice (Oryza sativa L.) in China[J];Jiangsu Journal of Agricultural Sciences;2006-03
2 ZHANG Qiao-feng1,2,JI Jian-an3,ZHANG Ya-dong2,ZHAO Ling2,ZHU Zhen2,WANG Cai-lin2 (1.College of Agriculture,Nanjing Agricultural University,Nanjing 210095,China;2.Institute of Food Crops,Jiangsu Academy of Agricultural Sciences,Jiangsu High Quality Rice Research & Development Center,Nanjing 210014,China;3.Jiangsu Seed Station,Nanjing 210036,China);Correlation Analysis between Tested Value and Comprehensive Taste Evaluation of Japonica Rice[J];Jiangsu Journal of Agricultural Sciences;2007-03
3 WANG Cai-lin,ZHU Zhen,ZHANG Ya-dong,ZHAO Ling(Jiangsu High Quality Rice R&D Center,Institute of Food Crops,Jiangsu Academy of Agricultural Sciences,Nanjing 210014,China);Status and Strategies on Breeding of Grain Quality for Japonica Rice in Jiangsu Province[J];North Rice;2007-03
4 SUN Ya-jun(Salt and Alkaline Field Utilization Research Institute North Rice Publishing House,Panjin Liaoning 124010,china);Reports on taste and evaluation of national fine quality japonica rice for good palatability[J];North Rice;2007-05
5 SHI Kuan-yu,HONG De-lin~*(National Key Laboratory of Crop Genetics and Germplasm Enhancement,Nanjing Agricultural University,Nanjing 210095,China);Polymorphism of 6 hybrids and their parents amplified by SSR primers and its application in rice(Oryza sativa L.)[J];Journal of Nanjing Agricultural University;2005-04
6 CHENG Bao-shan1,WAN Zhi-bing1,2,HONG De-lin1*(1.State Key Laboratory of Crop Genetics and Germplasm Enhancement,Nanjing Agricultural University,Nanjing 210095,China;2.Department of Resource and Environment,Huangshan University,Huangshan 245041,China);Establishment of SSR fingerprint map and analysis of genetic similarity among 35 varieties in japonica rice(Oryza sativa L.)[J];Journal of Nanjing Agricultural University;2007-03
7 WANG Sheng-jun 1, LU Zuo-mei 1, WAN Jian-min 1, 2 (1State Key Laboratory of Crop Genetics & Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; 2Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China);Genetic Diversity among Parents of Hybrid Rice Based on Cluster Analysis of Morphological Traits and Simple Sequence Repeat Markers[J];水稻科学(英文版);2006-03
8 YUAN Xiao-ping, WEI Xing-hua, HUA Lei, YU Han-yong, WANG Yi-ping, XU Qun, TANG Sheng-xiang (State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China);A Comparative Study of SSR Diversity in Chinese Major Rice Varieties Planted in 1950s and in the Recent Ten Years(1995-2004)[J];水稻科学(英文版);2007-02
9 Weidong Jin1, 2, Delin Hong1* 1 State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095 2 Suzhou Institute of Rural Cadre, Suzhou, Jiangsu 215011;Genetic diversity in japonica rice landraces (Oryza sativa) from the Taihu Lake region[J];Biodiversity Science;2006-06
10 ZHANG Suo-Bing1,2,ZHU Zhen1,ZHAO Ling1,ZHANG Ya-Dong1,CHEN Tao1,2,LIN Jing1,WANG Cai-Lin1 1.Institute of Food Crops,Jiangsu Academy of Agricultural Sciences,Jiangsu High Quality Rice R & D Center,Nanjing 210014,China;2.Nanjing Agricultural University,Nanjing 210095,China;Identification of SSR markers closely linked to eui gene in rice[J];Hereditas;2007-03
【Co-citations】
Chinese Journal Full-text Database 10 Hits
1 ZHANG Hui1,JIANG Yong2 (1.China Rural Technology Development Center,Beijing 100045,China; 2.High-tech Research Center,Shandong Academy of Agricultural Sciences,Jinan 250100,China);Discrimination of Indica or Japonica Based on Cheng's Method and SSR Markers[J];Shandong Agricultural Sciences;2009-03
2 CHEN Xin1,ZHANG Shi-gang2,WEI Hai-rong1,ZONG Xiao-juan1,WANG Jia-wei1,LIU Qing-zhong1*(1.Shandong Institute of Pomology,Taian 271000,China;2.Taian Agricultural Bureau,Taian 271000,China);ISSR Analysis of Genetic Diversity of Shanxi Walnut (Juglans regia) Populations[J];Shandong Agricultural Sciences;2012-05
3 Huo Yuyan et al. (School of Life Sciences,Yangtze University,Jingzhou 434025,China);Research Overview on Application of SSR Markers in Rice[J];Anhui Agricultural Science Bulletin;2010-23
4 Kang Meihua1 et al. (Rice Research Institute,Jiangxi Academy of Agricultural Sciences,Nanchang 330200,China);Research Progresses on Cooking and Eating Quality of Rice Grain[J];Anhui Agricultural Science Bulletin;2010-23
5 JU Yu-dong et al (Sugarcane Research Institute,Fujian Academy of Agricultural Science, Zhangzhou, Fujian 363005);Development and Application of Micro-satellite Markers in Rice[J];Journal of Anhui Agricultural Sciences;2005-10
6 CAI Guang-ze et al (Science and Technology Division of Xichang University,Xichang,Sichuan 615013);ISSR Analysis of Genetic Diversity of Specific Japonica Rice Varieties[J];Journal of Anhui Agricultural Sciences;2006-23
7 GUO Da-long(College of Forestry,Henan University of Science and Technology,Luoyang,Henan 471003);Development of the Microsatellite Primer in Plant[J];Journal of Anhui Agricultural Sciences;2007-18
8 WANG Nian et al (Henan Academy of Forestry,Zhengzhou,Henan 450008);Application and Prospect of AFLP Molecular Marker in the Genetic Breeding of Paulownia[J];Journal of Anhui Agricultural Sciences;2008-01
9 AO Guang-hui et al(Neijiang Normal University,Neijiang,Sichuan 641112);Analysis on the Molecular Marker Difference among Indica and Japonica Rice Subspecies[J];Journal of Anhui Agricultural Sciences;2008-05
10 LIANG Yan-li et al(Guangxi Crop Genetic Improvement and Biotechnology Lab,Agricultural College of Guangxi University,Nanning,Guangxi 530007);Study on Genetic Diversity and Nucleus Germplasm Construction of Yongning Common Wild Rice(Oryza rufipogon Griff.) Populations in Guangxi[J];Journal of Anhui Agricultural Sciences;2008-11
China Proceedings of conference Full-text Database 10 Hits
1 Wei Xin;Pan Guangtang (Maize Research institute, Sichuan Agriculture University, Yaan, Sichuan, 625014);The genetic diversity variation revealed by SSR markers in the tropical maize population Pob32 after 5 cycles of mass selection[A];[C];2004
2 LIU Wei~(1,2) LI Zi-chao~2 SHI Yan-li~1 MA Hong-wen~1 WANG Jian~1 ZHANG Hong-liang~2 1.The Crop Research Institute of Ningxia Academy of Agricultural and Forestry Sciences,Ningxia Yongning 750105,China; 2.Department of Plant Genetics and Breeding,China Agricultural University,Beijng 100094,China;Genetic diversity of Japonica rice varieties based on SSR markers[A];[C];2005
3 LI Xiao-xiang~(1,2) LI Yong-chao~ DUAN Yong-hong~1 ZHANG Qing-cai~1 SUN Gui-hua~1 WANG Shu-hong~1 LIU Yong~2 (1.Hunan Rice Research Institute,Changsha 410125,China;2 School of Biological Science and Technology,Central South University,Changsha 410083,China);SSR Diversity of Introduction Rice Germplasm and Conventional Rice Varieties Bred in Hunan[A];[C];2006
4 Zhao Jianjun Wang Xiaowu Guusje.Bonnema Dick.Vreugdenhil Maarten.Koornneef Xu Zeyong Sun Rifen (Institute of Vegetables and Flowers, Oil Crop Research Institute, Chinese Academy of Agricultural Sciences, College of Life Science, Hebei Agricultural University ; Laboratory of Plant Genetics and Breeding, Wageningen University, The Netherlands);Genetic Diversity for Brassica rapa Inferred from AFLP Fingerprints[A];[C];2004
5 ;龙眼种质资源果实经济性状稳定性评价[A];[C];2006
6 By X. P. WEN, X. M. PANG and X. X. DENG National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China Bioengineering Center, Guizhou University, Guiyang 550025, China;Characterization of genetic relationships of Rosa roxburghii Tratt and its relatives using morphological traits,RAPD and AFLP markers[A];[C];2005
7 LI Fa-jun~1,FU Hong-Tuo~(1,2),QIAO Hui~1,LI Ming-shuang~1 (1.Wuxi Fishery College,Nanjing Agricultural University,Wuxi 214081,China;2.Freshwater Fishery Research Center,Chinese Academy of Fishery Sciences,Key Open Laboratory for Genetic Breeding of Aquatic Animals and Aquaculture Biology,Ministry of Agriculture,Wuxi 214081,China);Analysis of genetic diversity among Macrobrachium nipponensis populations in the Yangtze River using microsatellite markers[A];[C];2008
8 LI Fa-jun~1,FU Hong-tuo~(1,2),QIAO Hui~1,LI Ming-shuang~1 (1.Wuxi Fishery College,Nanjing Agricultural University,Wuxi 214081,China;2.Freshwater Fishery Research Center,Chinese Academy of Fishery Sciences,Key Open Laboratory for Genetic Breeding of Aquatic Animals and Aquaculture Biology,Ministry of Agriculture,Wuxi 214081,China);Identification of microsatellite loci by magnetic bead enrichment method in Macrobrachium nipponensis[A];[C];2008
9 TAI Li-mei, DU Juan , ZENG Ya -wen , LI Zi-chao , ZHANG Hong-liang, PU Xiao-ying, YANG Shu-ming, LING Qing ( Biotechnology and Genetic Resources Institute, Yunnan Academy of Agricultural Sciences, Yunnan Kunming 650205, China; Yunnan Agricultural University, Yunnan Kunming 650201, China; Chinese Agricultural University, Beijing 100094 , China; Yunnan Agriculture Occupation Technical College, Yunnan Kunming 650031, China);The cluster analysis of peculiarity of Indica and Japonica In Simao[A];[C];2006
10 MuJingui Wang Xiaoling ZhaoDegang Bai Yangnian Hainan Institute of Tropical Agricultural Resources, Sanya, 572025; 2 College of Life Science, Guizhou University, Guiyang, 550025;Progress on Molecular Genetic Linkage Map in Soybean[A];[C];2006
【Co-references】
Chinese Journal Full-text Database 10 Hits
1 YANG Wen-xiang,WANG Qiang-sheng,WANG Shao-hua,LI Gang-hua,DING Yan-feng~*(Key Laboratory of Crop Growth Regulation,Ministry of Agriculture,Nanjing Agricultural University,Hi-Tech Key Laboratory of Information Agriculture,Jiangsu Province,Nanjing 210095,China);Effects of Mg Fertilization on Mg Uptake and Partition by Rice and Rice Cooking Quality[J];Acta Botanica Boreali-Occidentalia Sinica;2006-12
2 ZOU Xiao-yun~1,SHENG Guo-qing~2,FU Jun-ru~1,HU Biao-lin~2,HE Hao-hua~(1*) (1.College of Agronomy,JAU,Nanchang 330045,China 2.Rice Research Institute,Jiangxi Academy of Agricultural Sciences,Nanchang 330200,China);The Studies on the Relation Between the Main Grain Quality Traits and the Yield Traits in Indica Hybrid rice[J];Acta Agriculturae Universitatis Jiangxiensis;2006-01
3 ZHU Zhen-hua,JIANG Zhi-nong,ZHAO Guo-zhen,SU Zhen-xi(The Center of Japonica Rice Breeding,Yunnan Academy of Agricultural Sciences,Kunming 650205,China);Factor and Cluster Analysis on Japonica Rice Quality of Yunnan Plateau[J];Acta Agriculturae Universitatis Jiangxiensis;2008-02
4 He Haohua Peng Xiaosong Liu Yibai(The College of Agronomy, Jiangxi Agricultural Univ.);Effect of Environmental Conditions on Rice Quality[J];Acta Agriculturae Jiangxi;1997-04
5 ZHANG Peng-li , WANG Chang-qing , LI Yong-xin , SHAN Wen-zhong (Liaoning Panjin Dingxiang Group, Panjin Liaoning 124106, China);Evaluation Indexes of Coking and Eating Quality of Rice and Influence Factors[J];North Rice;2008-01
6 Wang xiaoling1 Guo Anping1 Peng Yufa2 Liu Enping1 Konghua 1 Lin Haimei 1 He Lika1 Institute of Tropical Bioscience and Biotechnology State Key Biotechnology Laboratory for Tropical Crops 2 Institute of Plant Protection,CAAS Beijing 100094;Comparison and Analysis of Ribosomal DNA ITS Sequence of Common Wild Rice from Different Geographical Regions in Hainan[J];Chinese Journal of Tropical Crops;2008-04
7 SHEN Peng, QIAN Chun-rong, JIN Zheng-xun, LUO Qiu-xiang, JIN Xue-yong (Agricultural College, Northeast Agricultural University, Harbin 150030, China);Relationship Between Variation in Activities of Key Enzymes Related to Starch Synthesis During Grain Filling Period and Quality of Eating and Cooking in Rice[J];水稻科学(英文版);2006-01
8 LIU Qi-hua 1,ZHOU Xue-biao 1,YANG Lian-qun 1,LI Tian 2(1Shandong Rice Research Institute,Jining 272177,China;2College of Agronomy,Sichuan Agricultural University,Ya’an 625014,China);Effects of Chalkiness on Cooking,Eating and Nutritional Qualities of Rice in Two indica Varieties[J];水稻科学(英文版);2009-02
9 WU Chang-Ming 1,2 SUN Chuan-Qing 1 FU Xiu-Lin 2 WANG Xiang-Kun 1 LI Zi-Chao 1 ZHANG Qiang 2 ( 1 China Agricultural University, Beijing 100094; 2 Jilin Academy of Agricultural Sciences, Gongzhuling, Jilin 136100,China);Study on the Relationship between Quality,Yield Characters or Indica-japonica Differentiation in Rice (Oryza sativa L.)[J];Acta Agronomica Sinica;2003-06
10 WANG Xiangkun;CAI Hongwei;SUN Chuangqing;WANG Zhenshan;PENG Hanhua.(Beijing Agricultural University, Beijing 100094, Crop Germplasm Resource Institute, Chinese Academy of Agricultural Sciences. Beijing 100081);The Preliminary Study on the Primitive Type of Oryza rufipogon Griff.in China and Its Hsien-Keng Differentiation[J];CHINESE JOURNAL OF RICE SCIENCE;1994-04
【Secondary References】
Chinese Journal Full-text Database 1 Hits
1 ZHANG Hong-cheng,ZHANG Jun,GONG Jin-long,CHANG Yong,LI Min,GAO Hui,DAI Qi-gen,HUO Zhong-yang,XU Ke,WEI Hai-yan(College of Agriculture,Yangzhou University/Innovation Center of Rice Cultivation Technology in the Yangtze Valley,Ministry of Agriculture/Key Laboratory of Crop Genetics and Physiology of Jiangsu Province,Yangzhou 225009,Jiangsu);The Productive Advantages and Formation Mechanisms of “Indica Rice to Japonica Rice”[J];Scientia Agricultura Sinica;2013-04
【Secondary Citations】
Chinese Journal Full-text Database 10 Hits
1 GAO Li-min~1,CHEN Yun-qi~2,YU Xian-chang~1,LIU Hong-xing~2 (1.Department of Horticulture, Shandong Agricultural University, Taian 271018,China;2.Vegetable Research Institute, Shandong Academy of Agricultural Sciences,Jinan 250100,China);Correlation and path analysis of some agronomic character of welsh-onion[J];Shandong Agricultural Sciences;2005-01
2 Su Zesheng (Rice Research Institute,Anhui Academy of Agriculture Sciences,Hefei 230031);Analysis of the Relationship between the Tasted Values from Rice Taste Instrument and Rice Taste Characters[J];JOURNAL OF ANHUI AGRICULTURAL SCIENCES;2000-02
3 SHEN Peng,LUO Qiu-xiang,JIN Zheng-xun (Agronomy College,Northeast Agricultural University,Harbin,Heilongjiang, 150030,PRC);Relationship between protein content and the cooking and eating quality properties of rice grain[J];Journal of Northeast Agricultural University;2003-04
4 Liang Kangjing Wang Naiyuan Yang Rencui (Institute of Genetics and Crop Breeding, FAC, Fuzhou 350002);Inheritance and Breeding Utilization of Panicle Exsertion of Rice[J];;1992-04
5 ZHANG Qing qi, HUANG Rong hua, ZHANG Shu biao, LIANG Kang jing, WANG Nai yuan, YANG Ren cui (Institute of Genetics & Crop Breeding, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China);Development of CMS line Xieqingzao eA(1) with eui gene[J];Journal of Fujian Agricultural University(Natural Science);2000-04
6 Wu Shibi, Zhang Qihua ( Quanzhou Institute of Agricultural Sciences );STUDY ON INDUCED MUTATION LEADING TO OBTAINING A RECESSIVE TALL-CULM GENE IN RICE[J];;1988-01
7 HUANG Rong\|hua,YANG Ren\|cui,LIANG Kang\|jing,WANG Nai\|yuan, ZHANG Qing\|qi,ZHANG Su\|biao (Institute of Genetics and Crop Breeding,Fujian Agricultural and Forestry University, Fuzhou,Fujian\ 350002,China);Development of Xieqingzao eui CMS lines in indica rice[J];Fujian Journal of Agricultural Sciences;2001-02
8 Wang Jinhua1,2 Luo Wenyong1 Chen Jianwei1 Liu Yuanfeng1,2 Wu Qiuhua1,2 Li Xiaofang1*1 Rice Research Institute Academy of Guangdong Agricultural Sciences, Guangzhou, 510640; 2 College of Life Science, South China Normal University, Guangzhou, 510631* Corresponding author, lixiaofang38@263.net;Genetic Diversity in Cultivated Fragrance Rice Varieties Revealed by SSR and ISSR Markers[J];Molecular Plant Breeding;2005-01
9 Wang Aishun1 Li Jinbo2 Liu Hanzhen1 1 Hubei Provincial Seed Management Station, Wuhan, 430070; 2 Hybrid Rice Researc h and Development Center, Hubei Academy of Agricultural Sciences, Wuhan, 430064;Research Advance on Application of DNA Fingerprinting to Identification Seed Purity and Authenticity in Hybrid Rice[J];Molecular Plant Breeding;2005-03
10 ZHANG Shu\|biao\ YANG Ren\|cui\ HUANG Rong\|hua\ ZHANG Qing\|qi (Institute of Genetics and Crop Breeding, Fujian Agricultural and Forestry University, Fuzhou, Fujian prov.\ 350002);DEVELOPMENT OF eui-T(P)GMS-LINE PEIAI64eS(1)OF RICE[J];(牠丁文)acta Agriculturae Nucleatae Sinica;2001-04
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