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《Journal of Shenyang Agricultural University》 2014-06
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Analysis of Genetic Diversity and Genetic Structure about Rice Materials from Cold Region

CHENG Fang-yan;LI Chun-guang;LIU Yong-wei;SUN Yi-xuan;WANG Ji-liang;MENG Zhao-he;XU Zheng-jin;Rice Research Institute,Shenyang Agricultural University;Rice Research Institute,Heilongjiang Academy of Land Reclaimable Sciences;Institute of Crop Development, Heilongjiang Academy of Land Reclaimable Sciences;  
Genetic diversity and genetic structure are analyzed about japonica rice materials form cold region by SSR. 36 rice varieties are analyzed by using a set of 48 SSR molecular markers located on 12 link groups. The results indicated that total 27 of 48 SSR primers performed polymorphism, which accounts for 56% of total primers. The average number of alleles was 2.4.The average genetic diversity index(He) was 0.307, the range was 0.662-0.050. The average polymorphism information content(PIC) was 0.263, the range is 0.588-0.053, the average, shannon′s index was 0.514,the range is 0.127-1.168. Genetic similarity coefficient between the varieties tested between 0.38-1.00, with an average of 0.77. The genetic similarity coefficient in 0.71-0.86 accounted for 68.4% of overall, less than 0.71 accounted for 19%, exceeding 0.86 accounted for 12.5%. The analysis of the genetic structure indicated that 36 rice materials were divided into five groups, the He range was 0.7642(group Ⅰand group Ⅳ)-0.9303(group Ⅲ and group Ⅴ), the genetic distance range was 0.0719(groupⅢ and group Ⅴ)-0.269(groupⅠand group group Ⅳ). Five groups were divided into 3 categories, from the clustering figure, groupsⅢ and Ⅴ and Ⅱ were gathered for a group, group Ⅲ and group Ⅴ were gathered for a class first, groupⅠ and Ⅳ were respectably. The same unit varieties had close genetic relationship by overall analysis. The breeders are adviced to choose parent materials from other units or regions in the future.
【Fund】: 国家科技支撑计划项目(2011BAD35B02-01-01)
【CateGory Index】: S511.22
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