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《Acta Microbiologica Sinica》 2003-06
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MGAP-A Microbe Genome Annotation Platform

Yu Zhou Li Tao Cai Tao Zhao Jindong Luo Jingchu * (College of Life Sciences, National Laboratory of Protein Engineering and Plant Genetic Engineering, Centre of Bioinformatics, Peking University, Beijing 100871, China)  
A Microbe Genome Annotation Platform (MGAP) was developed and applied to the cynobacterium PCC7002 genome annotation. Various bioinformatics software tools from sequence analysis to gene identification and function prediction were implemented in MGAP. Protein sequence databases SWISSPROT and PDBseq, protein information resource InterPro and COG were also integrated in the platform. The web interface of MGAP has the functionality to display a circular map of gene distribution and GC contents throughout the genome. Detailed information such as the DNA and protein sequence, the location of genes on chromosomes can be viewed by clicking the corresponding object within the map. MGAP is based on a PC/Linux system affordable for small biological laboratories and has the advantage of using free software tools including MySQL, Apache and Perl.
【Fund】: 国家“8 63计划”(2 0 0 1AA2 3 1 0 0 1 1 2 0 0 2AA2 3 1 0 61 ) ;; 国家自然科学基金 (G1 9980 1 0 1 0 0 ) ;; 北京市科委基金(H0 1 0 2 1 0 3 5 0 1 1 2 )~~
【CateGory Index】: Q933
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Chinese Journal Full-text Database 4 Hits
1 ZNEGN Si-ping1,CHEN Bin1,SONG Ya-na1,GUAN Xiong2,ZHENG Wei-wen1,2(1.Biotechnology Institute of Fujian Academy of Agricultural Sciences,Fuzhou,Fujian 350003,China;2.Key Laboratory of Biopesticide and Chemical Biology,Ministry of Education,Fujian Agriculture and Forestry University,Fuzhou,Fujian 350002,China);Establishment of a database system on special microbial genomes[J];Fujian Journal of Agricultural Sciences;2010-03
2 SUN Zhong-ke1, DU Wei2, REN Ge3, BO Xin1(1. College of Food Science and Engineering, Northwest A&F University, Yangling 712100, Shaanxi, China; 2. Postdoctoral Scientific Research Workstation, State Information Center, Beijing 100045, China; 3. Hospital of Northwest A&F University, Yangling 712100, Shaanxi, China);CYANOBACTERIA AND FUNCTIONAL FOOD DEVELOPMENT[J];Food Research and Development;2007-06
3 ZHENG Yong-liang1 LI Ping1 LIU De-li 1,2(1 College of Life Science, Central China Normal University Wuhan 430079,China)(2 Key Laboratory of Pesticide & Chemical Biology Ministry of Education, Central China Normal University Wuhan 430079,China );Bioinfomatics and Their Application to Environmental Microorganism[J];Progress In Biotechnology;2005-12
4 LIU Xian-kai, WANG Heng-liang, HUANG Liu-yu, HUANG Cui-fenInstitute of Biotechnology, Academy of Military Medical Sciences, Beijing 100071, China;Progress of microbial genome research[J];Letters in Biotechnology;2004-05
Chinese Journal Full-text Database 10 Hits
1 ZENG Yu 1, QIN Song 2, LIANG Ming-Shan 1 (1. Life Science Academy of Sichuan University, chengdu 610064, China: 2. Computer Science Academy of Sichuan University, Chengdu,610064 China);Advances on Comprehensive Utilization of Photosynthetic Bacteria[J];FISHERIES SCIENCE;2000-05
2 Gao Lihua,Zhou Yifei,Zheng Weiwen,Chen Guanshui,Song Yana,Lin Jie;Cloning and Analysis of NBS Class Resistant Gene Analogues in Squash(Cucurbita moschata Duch.)[J];Journal of Changjiang Vegetables;2007-08
3 PAN Xiao-yi,SHEN Jin-yu,YIN Wen-lin,CHAO Zheng (Key Laboratory of Fish Health and Immunology,Chinese Academy of Fishery Science,Zhejiang Institute of Freshwater Fisheries,Huzhou 313001,China);Vibriosis and their mechanisms in aquatic animals[J];Journal of Dalian Fisheries University;2006-03
4 LIN Zhi-min1,Song Ya-na1,YAO Mei-bin2,CHEN Bin1,ZHENG Wei-wen1(1.Biotechnology Institute,Fujian Academy of Agricultural Sciences,Fuzhou, Fujian 350003,China;2.Environmental Engineering College,Northeast Agricultural University,Harbin,Heilongjiang 150030,China);PCR detection and characterization of a phenol-degrading bacteria(Alcaligenes faecalis BC2001)[J];Fujian Journal of Agricultural Sciences;2007-01
5 SONG Bing 1,2,LI You-fa 1,2,LIN Zhi-min 1,CHEN Bin 1,ZHENG Wei-wen 1(1.Biotech Institute,Fujian Academy of Agricultural Sciences,Fuzhou,Fujian 350003,China;2.College of Life Science,Fujian Agriculture and Forest University,Fuzhou,Fujian 350002,China);PCR-DGGE and homological analyses on isolates of nitrogen-fixing paddy soil bacteria[J];Fujian Journal of Agricultural Sciences;2007-04
6 CHEN Bin,ZHENG Si-ping,ZHENG Wei-wen(Biotechnology Institute,Fujian Academy of Agricultural Sciences,Fuzhou,Fujian 350003,China);Infection association study by reconstituting Cycad revolute and cyanobacteria[J];Fujian Journal of Agricultural Sciences;2007-04
7 HUANG Wen-wen 1,2,CHEN Bin 2,ZHUANG Yi-ting3,CHEN Ning 4,ZHENG Wei-wen2,5(1.College of Life Science,Fujian Normal University,Fuzhou,Fujian 350108,China;2.Biotechnology Institute,Fujian Academy of Agricultural Sciences,Fuzhou,Fujian 350003,China;3.Fuzhou Environmental Monitoring Central Station,Fuzhou,Fujian 350003,China;4.Fujian Environment Protection Bureau,Fuzhou,Fujian 350003,China;5.Key Laboratory of Biopesticide and Chemical Biology,Ministry of Education,Fujian Agriculture and Forestry University,Fuzhou,Fujian 350002,China);Multiplex-PCR analyses and seasonal changes of virulence genes of E.coli isolated from Min river watersheds in Fuzhou[J];Fujian Journal of Agricultural Sciences;2008-04
8 Chen Jixiang, Li Yun, Wang Xianghong, Du Zongjun, Yu Dehua, Ji Weishang, Xu Huaishu (College of Marine Life Sciences, Ocean University of Qingdao 266003);Cloning and Sequencing of Metalloprotease Gene of A Pathogenic Vibrio Anguillarum[J];High Technology Letters;2002-06
9 Liang Jingjuan, Pang Zongwen (The Food and Fermentation Engineering Institute of Guangxi University, Nanning530004);Separation and Extraction of β-carotene from Spirulina platensis[J];Industrial Microbiology;1997-02
10 HUANG Jin-guang 1 ,PIAO Chun-gen 2 , TIAN Guo-zhong 2 ,FAN Zai-feng 1 , LI Huai-fang 1 (1Department of Plant Pathology,China Agricultural University,Beijing100094,China;2Research Institute of Forest Ecology,Environment and Protection, Chinese Academy of Forestry,Beijing100091,China);Designing of Database Index Searching for Forestry Microorganism Culture Collections[J];Agriculture Network Information;2004-06
【Secondary References】
Chinese Journal Full-text Database 4 Hits
1 YUAN You-hua,BAI Li(Department of Medical Microbiology and Immunology,College of Basic Medicine,Dali University,Dali,Yunnan 671000,China);Progress on genome of Candida Albicans[J];Journal of Dali University;2007-04
2 BI Jiang-tao1,2,3,HE Da-han1,CHEN Wei-min2,XIE Rui-mei2,WEI Ge-hong2*(1 Agricultural College of Ningxia University,Yinchuan 750012,China;2 Northwest A&F University,Yangling,Shaanxi 712100,China;3 Ningxia Extension Service for Agricultural Techniques,Yinchuan 750001,China);Analysis of Genetic Diversity and Phylogenesis of Rhizobia from Ammopiptanthus mongolicus[J];Acta Botanica Boreali-Occidentalia Sinica;2009-04
3 Xiao Hui (Hubei Professional Technology College of Eco-engineering Wuhan 430200);Advances on Microbial Gene Group[J];Hubei Forestry Science and Technology;2006-02
4 ZHONG Yao-guang1,2, LIU Chang-jiang2(1.College of Food Science and Technology, Shanghai Ocean University Shanghai 200090, China;2.College of FoodScience, Shenyang Agricultural University, Shenyang 110161, Liaoning, China);THE PROBLEMS AND PROSPECTS OF FUNCTIONAL FOOD IN CHINA[J];Food Research and Development;2009-02
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