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《Journal of Northwest A & F University(Natural Science Edition)》 2011-10
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Phylogenetic relationships of Botryosphaeria dothidea and its allies in China

ZHAO Na,ZHANG Wei-wei,GAO Xiao-ning,LIN Yue-li,KANG Zhen-sheng,HUANG Li-li(College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture,Northwest A&F University,Yangling,Shaanxi 712100,China)  
【Objective】 Phylogenetic relationships of Botryosphaeria dothidea and its allies in China were investigated based on analyses of rDNA-ITS sequences.Then the theoretical basis for the further study of their system development and evolution could be got.【Method】 113 apple ring rot isolates and 2 pear ring rot isolates from Shaanxi,Shanxi,Shandong,Henan and Sichuan province were used for direct rDNA-ITS sequencing.After BLASTn and analysis by the DnaSP 4.0 software,MP tree and NJ tree were constructed.At the same time genetic distances and number of different sites of rDNA-ITS sequences were calculated.【Result】 115 isolates were divided into 9 haplotypes(Hap_1-Hap_9).Hap_7(B.obtusa) was from Shanxi province.And Hap_9(B.stevensii) was from Sichuan province.Other haplotypes were B.dothidea.In addition,Hap_1 which contained 86 isolates had the highest frequency.Phylogenetic analysis showed that all sequences were divided into three groups.Three species,which were B.obtusa,B.rhodina and B.stevensii,formed groupⅠ,in which,B.obtusa formed an exclusive clade and also B.rhodina.Then B.stevensii clustered into three clades.Group Ⅱ had two clades:an exclusive clade was formed by B.lutea;B.ribis and B.parva were clustered together for their near genetic relationship.Group Ⅲ was constituted by B.dothidea and B.berengeriana,supporting the idea that they are synonymous.The analysis of genetic distances and different sequence sites showed the genetic distances between B.dothidea and its allies were 4.91%-7.57% and the different sequence sites were 31-54 bp.Moreover,the genetic distances between different haplotypes were 0.19%-1.93% and the different sequence sites were 1-10 bp.【Conclusion】 B.stevensii showed the characteristic of aggregate species and further study should be done.B.dothidea and its allies had far genetic relationship.And there were sequence of nucleotides differentiations within B.dothidea but the differentiation degree was low.There were differences among isolates from different geographical origins but the characteristics of their geographic differentiations were not obvious.
【Fund】: 公益性行业(农业)科研专项(3-22);; 高等学校学科创新引智计划项目(B07049)
【CateGory Index】: S436.611
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