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《Acta Agronomica Sinica》 2013-04
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Characterization of Dense and Erect Panicle 1 Gene(TaDep1) Located on Common Wheat Group 5 Chromosomes and Development of Allele-Specific Markers

LIU Ya-Nan 1,XIA Xian-Chun 1,and HE Zhong-Hu 1,2,* 1 Institute of Crop Sciences /National Wheat Improvement Center,Beijing 100081,China;2 CIMMYT China Office,c/o Chinese Academy of Agricultural Sciences,Beijing 100081,China  
Dense and erect panicle 1(OsDep1) gene is an important QTL controlling yield associated traits such as panicle length,erect type,and grain density in rice.In the present study,full-length genomic DNA sequences of TaDep1 on common wheat group 5 chromosomes were cloned by homologous cloning approach based on the sequences of rice OsDep1.TaDep1 has five exons and four introns,similar to that of rice OsDep1.The coding sequences of TaDep1-A1,TaDep1-B1,and TaDep1-D1 were 918,888,and 900 bp,encoding polypepetides of 305,295,and 299 amino acids,respectively.Five allelic variants on TaDep1-A1 locus,four on TaDep1-B1 locus,and two on TaDep1-D1 locus were identified.Three pairs of complementary dominant markers and one codominant marker were developed based on the sequence polymorphisms presented in allelic variants of TaDep1-A1 and TaDep1-B1.The codominant marker dep19,which can accurately discriminate the allelic variants of TaDep1-B1c from those of TaDep1-B1a,TaDep1-B1b,and TaDep1-B1d,was developed from a 30 bp InDel of different allelic variants at the fifth exon of TaDep1-B1.No significant association was found among the yield associated traits such as thousand-kernel weight,plant height,panicle length,spikelet number and spikelet spacing in 406 cultivars,indicating that these genes have no significant effect on the yield-related traits in current Chinese wheat cultivars.
【Fund】: 国家自然科学基金项目(31161140346);; 引进国际先进农业科学技术计划(948计划)重大国际合作项目(2011-G3)资助
【CateGory Index】: S512.1
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