Full-Text Search:
Home|Journal Papers|About CNKI|User Service|FAQ|Contact Us|中文
《Acta Phytotaxonomica Sinica》 2003-06
Add to Favorite Get Latest Update

Phylogenetic relationships among diploid species of Oryza officinalis complex revealed by multiple gene sequences

BAO Ying 1GE Song * 1(Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China) 2(Qufu Normal University, Qufu 273165, Shandong, China)  
Oryza officinalis complex includes five diploid species involving the B, C and E genomes, and is distributed in Asia, Africa and Oceania. These species are very important because O. australiensis is the only species with E genome, while O. punctata is the single species with B genome. Although there are three species with the C genome (O. eichingeri, O. officinalis and O. rhizomatis), these species might have played different roles in speciation of polylploids due to their disjunction in Asia and Africa. The phylogenetic relationships among these diploids are still unclear, and polyploidy speciation involving these diploids has long been in debate. In this study, we utilized the sequence data of multiple genes, including the chloroplast matK, internal transcribed spacer (ITS) fragment of nuclear ribosomal DNA, and two nuclear genes (Adh1 and Adh2), to infer the phylogenetic relationships among the diploids and the related genomes. The separate and combined analyses were implemented by both maximum parsimony and maximum likelihood methods. The results indicate that (1) the C genome showed a closer affinity to the B genome than to the E genome; (2) of the three species with the C genome, O. officinalis and O. rhizomatis showed a closer relationship to each other than to O. eichingeri; (3) notably, in O. eichingeri, there exists higher divergence between the samples from Africa and those from Sri Lanka although they formed one monophyletic clade with lower bootstrap support.
【Fund】: 国家杰出青年科学基金 ( 3 0 0 2 5 0 0 5 );; 中国科学院“十五”重要方向项目 (KSCXZ_SW_1 0 1A)资助~~
【CateGory Index】: Q949
Download(CAJ format) Download(PDF format)
CAJViewer7.0 supports all the CNKI file formats; AdobeReader only supports the PDF format.
Chinese Journal Full-text Database 8 Hits
1 GONG Han-yu,LIU Ru-liang,DONG Zheng-Wei,LIU Hong,QIN Rui,LI Gang(Key Laboratory of State Ethnic Affairs Commission for Biological Technology/College of Life Sciences,South-Central University for Nationalities,Wuhan 430074);Phylogenetic Analysis of Oryza officinalis Complex Based on Ribosome ITS1 and ITS2 Sequences[J];植物遗传资源学报;2011-03
2 Xu Jin1 Xu Tao1 Xiao Zhengkang1,2 Zhu Shuifang1 Zhang Wanxia3(1Institute of Animal and Plant Quarantine,Chinese Academy of Inspection and Quarantine,Beijing 100029;2College of Bio-safety Science and Technology,Hunan Agricultural University,Changsha 410128;3Institute of Crop Germplasm Resource,Chinese Academy of Agricultural Sciences,Beijing 100081);Analysis of psbA-trnH Gene Sequences of Gramineae and Its Application in Identification of Oryza punctata[J];生物技术通报;2011-02
3 MA Yong-]ting, BAO Ying(College of Life Science, Qufu Normal University, Qufu 273165, China);The Morphological Comparison of Abaxial Epidermis of Leaf in Three Oryza Species[J];热带亚热带植物学报;2009-01
4 LIU Zhi-wen1,2,HAN Xu2,ZHOU Suo-tong2,WANG Li2,LI Xian-zhen2,CHEN Wen-fu1(1.Rice Institute of Shenyang Agricultural University,Shenyang 110161,China;2.College of Biology and Food Technology,Dalian Polytechnic University,Dalian 116034,China);Optimizing of the PCR Amplification Conditions and Sequencing the Weedy Rice nrDNA ITS[J];华北农学报;2008-06
5 LIU Zhi-wen et al (Rice Institute,Shenyang Agricultural University,Shenyang,Liaoning 110161);Application of NuclearRibosomal DNA in the the Phylogenetic Development of Plants and Its Research Progresses[J];安徽农业科学;2008-09
6 1Ying BAO 2Song GE 1(College of Life Science, Qufu Normal University, Qufu 273165, China) 2(State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China);Historical retrospect and the perplexity on the studies of the Oryza polyploids[J];植物分类学报;2008-01
7 CHEN Jue-liang,OU Li-jun,LIU Ping,CHEN Liang-bi(College of Life Sciences,Hunan Normal University,Changsha 410081,Hunan,China);Study on the Genetic Difference of Different Wild Rice Genomes Revealed by RMAPD Markers[J];生命科学研究;2007-03
8 LIU Yan-ling, XU Li-ming, NI Xue-ming, Zhao Jia-rong (Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, Hubei, China);Phylogeny Relationship of Nymphaea L. Based on ITS Sequences[J];武汉大学学报(理学版);2005-02
Chinese Journal Full-text Database 1 Hits
1 LI Chang_Bao 1, ZHANG Da_Ming 1 *, GE Song 1, LU Bao_Rong 2, HONG De_Yuan 1 [WT6BZ](1. Laboratory of Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Sciences, Beijing 100093, China; 2. Genetic Resources Center, Int;Detection of Differentiation Among BB, CC and EE Genomes in the Genus Oryza by Two-probe Genomic in situ Hybridization (GISH)[J];植物学报;2000-09
Chinese Journal Full-text Database 2 Hits
1 GAO Lu,WANG De-bin,LIU Xin-qiong,QIN Rui(Key Laboratory of State Ethnic Affairs Commission for Biological Technology,College of Life Sciences, South-Central University for Nationalities,Wuhan 430074,China);Comparative Analysis of Genomes in Oryza Sativa,O.punctata and O.officinalis[J];湖北农业科学;2007-04
2 BAO Ying 1GE Song * 1(Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China) 2(Qufu Normal University, Qufu 273165, Shandong, China);Phylogenetic relationships among diploid species of Oryza officinalis complex revealed by multiple gene sequences[J];植物分类学报;2003-06
【Secondary References】
Chinese Journal Full-text Database 10 Hits
1 Sun Jian;Tu Yuqin;Yan Tingxian;Le Meiwang;Rao Yueliang;Lei Gang;Yan Xiaowen;Zhou Hongying;Crops Research Institute of Jiangxi Academy of Agricultural Sciences,Nanchang Branch of National Center of Oilcrops Improvement;Vegetable and Flower Institute of Jiangxi Academy of Agricultural Sciences;College of Agronomy,Jiangxi Agricultural University;;Orthogonal Optimization of RMAPD-PCR Reaction System for Sesame and Its Application[J];分子植物育种;2015-08
2 XIE Wei-ling;ZOU Rong;YANG Xue;TANG Jian-min;CHAI Sheng-feng;College of Life Sciences,Guangxi Normal University;Guangxi Institute of Botany,Guangxi Zhuang Autonomous Region and the Chinese Academy of Sciences;College of Agriculture,Guangxi University;;Research Progress of DNA Barcode in Rare and Endangered Plants[J];北方园艺;2015-04
3 ZHAO Yue-mei;GAO Ming-jie;College of Biopharmaceutical and Food Engineering, Shangluo University;;Analysis of ITS Sequences in Lespedeza[J];商洛学院学报;2014-06
4 ZHU Guozhong;DAI Weimin;CHEN Xiaofeng;ZHANG Jingxu;QIANG Sheng;Weed Research Laboratory/Weed Control Engineering,Jiangsu Province Technology Center,Nanjing Agricultural University;;Development of molecular markers in weedy rice chloroplast based on genomic database[J];南京农业大学学报;2015-02
5 YU Min;ZHANG Hao;LIU Sheng-quan;JIN Qing;LI Da-zhou;School of Forestry and Landscape Architecture,Anhui Agricultural University;School of Life Science,Anhui Agricultural University;Hainan Institute of Forestry;;DNA Extraction and Ribosomal DNA-ITS Sequence Molecule Barcode Identification from Wood Tissue of Dalbergia odorifera T. Chen[J];林产化学与工业;2014-05
6 YI Fan;HAN Feng-ming;PENG Yong;Institute of Medicinal Plant Development,Chinese Academy of Medical Sciences and Peking Union Medical College;;Molecular Identification of 15 Species of Ilex Genus Based on ITS Sequence Analysis[J];中药材;2014-06
7 ZHANG Jian-liang;WANG Li;ZHENG Jin-rong;HE Qin;CAO Gan;HAN Fu-guang;LI Zhi-jun;Crop Research Institute,Guangdong Academy of Agricultural Sciences;;Genetic divergence analysis of Jatropha(Jatropha curcus L.) germplasm based on nuclear ribosomal DNA ITS sequence[J];广东农业科学;2014-04
8 HOU Jin-hui;LIU Tong;LI Tong-xiang;Xuzhou Institute of Technology;;Screening,Identification and Activity Analysis of a Cellulase Producing Strain Pantoea Ananatis P5[J];徐州工程学院学报(自然科学版);2013-04
9 DUAN Yong-hong;LI Xiao-xiang;LIU Wen-qiang;PAN Xiao-wu;ZHOU Zhi-wu;LI Wei-hong;SHENG Xin-nian;Hunan Rice Research Institute;;Main Morphological and Biological Characters and Utilization Status of Rice Resources in Hunan Province[J];植物遗传资源学报;2013-06
10 LI Ya et al(Jiangxi Key Laboratory of Plan Resource,College of Life Science and Food Engineering,Nanchang University,Nanchang,Jiangxi 330031);Application of Nuclear rDNA Molecular Markers in Study on Orchidaceae[J];安徽农业科学;2013-10
©2006 Tsinghua Tongfang Knowledge Network Technology Co., Ltd.(Beijing)(TTKN) All rights reserved