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《Journal of Guangxi Normal University(Natural Science Edition)》 2017-03
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Phylogeny of Macrobrachium Species Using Mitochondrial 16S Ribosomal DNA

ZHANG Xiaomin;LIN Yong;BIN Shiyu;YU Yanling;ZENG Lan;ZHONG Dandan;ZHANG Yongde;College of Life Science,Guangxi Normal University;Guangxi Academy of Fishery Sciences,Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture;  
To understand the evolutionary relationship among the Macrobrachiumspecies,mitochondrial partial 16 Sribosomal DNA of M.rosenbergii was amplified and sequenced.By sequence alignment from511 characters,178 characters are variable and 162 characters are parsimony informative.The parameters specified under optimum model were nucleotide frequencies ofηA=0.306 3,ηC=0.065 7,ηG=0.204 6,ηT=0.423 3;reversal rates of change for[A-C]=0.042 7,[A-G]=0.248 59,[A-T]=0.028 4,[C-G]=0.032 9,[C-T]=0.629 0,[G-T]=0.018 4.The proportion of invariant sites was0.428 7,and gamma shape distributionα=0.429 8.No substitution saturation was found as the level of transitional base substitutions was higher than the level of transversions over all genetic distances.Bayes phylogenetic tree was constructed by using Bayesian method.The out group Palaemon formed as paraphyletic to Macrobrachium with significant bootstrap value.Principally all species clustered into 3big clades as their evolutionary relationship,in which,M.malayanum constitute a big clade,M.carcinus,M.americanum and M.vollenhovenii constituted another big clade,and the other 32 Macrobrachium constituted the third big clade.M.rosenbergii,M.japonicum,M.meridionalis,M.gracilirostre,M.jaroense,M.horstii,M.placidulum,M.lepidactyloides,M.lar,M.latimanus and M.ohione formed one cluster.
【Fund】: 广西科学研究与技术开发计划项目(桂科能14121008-4-1);; 国家现代农业产业技术体系广西罗非鱼创新团队建设项目(nycytxgxcxtd-08-01)
【CateGory Index】: S917.4
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【Citations】
Chinese Journal Full-text Database 2 Hits
1 MAO Zhichao;DUAN Yafei;LIU Ping;LI Jian;CHEN Ping;College of Fisheries and Life Science, Shanghai Ocean University;Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture,Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;Key Laboratory of South China Sea Fishery Resources Exploitation & Utilization, Ministry of Agriculture,South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;;Sequence comparison in Parapenaeopsis hardwickii and its phylogenetic analysis of mtDNA 16S rRNA and COⅠ gene sequences with genus Parapenaeopsis[J];水产学报;2016-07
2 HUANG Guiju,YU Dahui,GUO Yihui,QU Nini(Key Lab. of Mariculture,Ecology and Quality Control,Ministry of Agriculture;South China Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Guangzhou 510300,China);Phylogenetic relationship of pearl oysters in genus Pinctada based on partial mitochondrial 16S rRNA sequence[J];南方水产;2009-06
【Co-citations】
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1 ZHANG Xiaomin;LIN Yong;BIN Shiyu;YU Yanling;ZENG Lan;ZHONG Dandan;ZHANG Yongde;College of Life Science,Guangxi Normal University;Guangxi Academy of Fishery Sciences,Guangxi Key Laboratory of Aquatic Genetic Breeding and Healthy Aquaculture;;Phylogeny of Macrobrachium Species Using Mitochondrial 16S Ribosomal DNA[J];广西师范大学学报(自然科学版);2017-03
2 ZHANG Xi1,2,XIN Kong-wu1,YU Da-hui1,HUANG Gui-ju1(1.Key Laboratory of Mariculture,Ecology and Quality Control,Ministry of Agriculture;South China Sea Fisheries Research Institute,the Chinese Academy of Fishery Sciences,Guangzhou 510300,China;2.College of Fisheries and Life Science,Shanghai Ocean University,Shanghai 201603,China);Impact of traditional Chinese medicines on recuperation of nucleus inserting cut and pearl quality in pearl oyster Pinctada fucata[J];海洋科学;2011-06
3 MAO Yangli1,CAI Houcai2,LI Chengjiu3,GAO Tianxiang1(1. College of Fisheries,Ocean University of China,Qingdao 266003,China;2. Nanji Islands National Marine Nature Reserve Administration,Pingyang 325400,China;3. Fisheries Seed Bureau of Liaoning,Dalian 116015,China);Molecular phylogenetics of genus Mytilus based on COI and 16S rRNA sequences[J];南方水产;2010-05
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1 LIU Ping;DUAN Yafei;MAO Zhichao;LI Jitao;GAO Baoquan;LI Jian;Key Laboratory of Sustainable Development of Marine Fisheries,Ministry of Agriculture,Yellow Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences;;Sequence comparison and phylogenetic analysis of mtDNA 16S rRNA and COⅠ gene sequences in Orithyia sinica[J];水产学报;2013-10
2 HE Xian-Bao 1,YU Cun-Gen 1,QIN Tao 1,ZHENG Xian-Zhi 1 and NING Ping 1,2(1.Fishery College,Zhejiang Ocean University,Zhoushan 316004,China;2.Second Institute of Oceanography,Hangzhou 310012,China);THE ANALYSIS OF THE COMMUNITY CHARACTERISTICS OF SHRIMPS IN ZHOUSHAN FISHING GROUND AND ITS ADJACENT WATERS[J];水生生物学报;2013-03
3 CHEN Xing1, SHEN Yong-Yi 2,*, ZHANG Ya-Ping 1,2,* (1. Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming 650223, China; 2. State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, the Chinese Academy of Sciences, Kunming 650223, China);Review of mtDNA in molecular evolution studies[J];动物学研究;2012-06
4 MA Peng1, 2, LIU Ping1, LI Jian1, LI Ji-Tao1, GAO Bao-Quan1 (1. Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071; 2. Ocean University of Dalian, Dalian, 116023);THE GENETIC DIVERSITY OF THE 16S rRNA GENE IN THE MITOCHONDRIAL DNA OF THREE WILD POPULATIONS OF EXOPALAEMON CARINICAUDA[J];海洋与湖沼;2012-01
5 XU Zhao-huan1, 2, CHEN Ju-lian2, CHENG Deng-fa2, LIU Yong1 and Frédéric Francis3 1 College of Plant Protection, Shandong Agricultural University, Tai'an 271018, P.R.China 2 State Key Laboratory for Biology of Plant Disease and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, P.R.China 3 Functional and Evolutionary Entomology, Gembloux Agro-Bio Tech, University of Liege, Passage des Déportés 2, Gembloux B-5030, Belgium;Genetic Variation Among the Geographic Population of the Grain Aphid, Sitobion avenae (Hemiptera: Aphididae) in China Inferred from Mitochondrial COI Gene Sequence[J];Agricultural Sciences in China;2011-07
6 MAI Wei-jun et al(Institute for Life Sciences,Jiangsu University,Jiangsu,Zhenjiang 212013);Study on Molecular Evolutionary of 13 Kinds of Penaeidae in the Offshore of China and Allied Species[J];安徽农业科学;2011-18
7 GAO Jun-na1,2 LIU Ping2 LI Jian2 PAN Lu-qing1 GAO Bao-quan2 CHEN Ping2(1Ocean University of China,Qingdao 266003)(2Yellow Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Qingdao 266071);Comparison of genetic characteristics of three Portunus trituberculatus populations based on the sequences of mitochondrial 16S rRNA and COI gene[J];渔业科学进展;2010-05
8 BI Xiaoxiao1,GAO Tianxiang1,XIAO Yongshuang1,LI Yongzhen2(1.Key Lab.of Mariculture,Ministry of Education,Ocean University of China,Qingdao 266003,China;2. South China Sea Fisheries Research Institute,Chinese Academy of Fishery Sciences,Guangzhou 510300,China);Sequence comparison of mtDNA 16S rRNA,COI and Cyt b gene fragments in four species of Gadidae fish[J];南方水产;2009-03
9 Wang Yan Shi Yaohua Gu Zhifeng Wang Aimin Ocean College of Hainan University,Key Laboratory of Tropical Biology Resources,Ministry of Education,Hainan Key Laboratory of Tropical Hydrobiology Technology,Haikou,570228;Phylogenetic and Genetic Diversity Studies on five Common Pearl Oysters Populations[J];基因组学与应用生物学;2009-02
10 SONG Hai-Tang1,YU Cun-Gen2 and XUE Li-Jian1(1.Marine Fisheries Research Institute of Zhejiang Province,Zhoushan 316100;2.Fishery College,Zhejiang Ocean University,Zhoushan 316004);STUDY ON THE BIOMASS DISTRIBUTION AND GROWTH PROPERTY OF PARAPENAEOPSIS HARDWICKII IN THE EAST CHINA SEA[J];水生生物学报;2009-01
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