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Dopamine 3 Receptor Homology Model and Its Application

MA Li-ying1,XU Si-chuan2(1.College of Environment and Life Science,Kaili University,Kaili 556011,China; 2.College of Chemistry Science and Engineering,Yunnan University,Kunming 650091,China)  
With the crystal structure of Rhodopsin(resolution: 2.2) as a template,D3R protein was modeled by homology modeling.Erythrina molecules were docked into the modeled protein D3R.With the ligand molecule selected as a centroid,a spatial dimension with a radius of 6 was selected in the docked D3R protein.Binding energy or repulsive energy was calculated between all amino acid residues and ligand molecules in the spatial dimension.Active sites for Erythrina molecules binding to the D3R protein have been found basing on the calculated binding energies.
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